1H64 Sm-Like Protein date Jun 05, 2001
title Crystal Structure Of The Sm-Related Protein Of P. Abyssi The Biological Unit Is A Heptamer
authors C.Mayer, S.Weeks, D.Suck
compound source
Molecule: Snrnp Sm-Like Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2;
Engineered: Yes
 Organism_scientific: Pyrococcus Abyssi
Organism_taxid: 29292
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pet24d
Other_details: Genomic Dna
symmetry Space Group: P 1
R_factor 0.237 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.330 70.160 116.010 90.21 97.70 107.48
method X-Ray Diffractionresolution 1.9 Å
note 1H64 is a representative structure
Primary referenceCrystal structures of the Pyrococcus abyssi Sm core and its complex with RNA. Common features of RNA binding in archaea and eukarya., Thore S, Mayer C, Sauter C, Weeks S, Suck D, J Biol Chem. 2003 Jan 10;278(2):1239-47. Epub 2002 Oct 29. PMID:12409299
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (1h64.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (1h64.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (1h64.pdb3.gz) 91 Kb
  • Biological Unit Coordinates (1h64.pdb4.gz) 90 Kb
  • CSU: Contacts of Structural Units for 1H64
  • Likely Quarternary Molecular Structure file(s) for 1H64
  • Retrieve 1H64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H64 from S2C, [Save to disk]
    • View 1H64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1H64
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H64, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h641_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1h642_, region 2 [Jmol] [rasmolscript] [script source]
        - Domain d1h64a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h64b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1h64c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1h64d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1h64e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1h64f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1h64g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1h64h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1h64i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1h64j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1h64k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1h64l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1h64m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1h64n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1h64o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1h64p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1h64q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1h64r_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1h64s_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1h64t_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1h64u_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1h64v_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1h64w_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1h64x_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1h64y_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1h64z_, region Z [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h64_F] [1h64] [1h64_Y] [1h64_T] [1h64_X] [1h64_1] [1h64_H] [1h64_W] [1h64_R] [1h64_K] [1h64_D] [1h64_B] [1h64_Z] [1h64_M] [1h64_C] [1h64_S] [1h64_J] [1h64_V] [1h64_U] [1h64_I] [1h64_N] [1h64_E] [1h64_P] [1h64_O] [1h64_A] [1h64_L] [1h64_Q] [1h64_G] [1h64_2]
  • SWISS-PROT database: [Q9V0Y8]
  • Domain organization of [RUXX_PYRAB] by SWISSPFAM
  • Domain found in 1H64: [Sm ] by SMART
    • Other resources with information on 1H64
  • Community annotation for 1H64 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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