1H6T Cell Adhesion date Jun 22, 2001
title Internalin B: Crystal Structure Of Fused N-Terminal Domains.
authors W.D.Schubert, G.Gobel, M.Diepholz, A.Darji, D.Kloer, T.Hain, T.Chakraborty, J.Wehland, E.Domann, D.W.Heinz
compound source
Molecule: Internalin B
Chain: A
Fragment: Lrr Domain, Residues 36-321
Engineered: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 1639
Strain: Egd (Serovar 12a)
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.953 72.818 115.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
related structures by homologous chain: 1D0B
Primary referenceInternalins from the human pathogen Listeria monocytogenes combine three distinct folds into a contiguous internalin domain., Schubert WD, Gobel G, Diepholz M, Darji A, Kloer D, Hain T, Chakraborty T, Wehland J, Domann E, Heinz DW, J Mol Biol 2001 Sep 28;312(4):783-94. PMID:11575932
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1h6t.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 1H6T
  • Likely Quarternary Molecular Structure file(s) for 1H6T
  • Retrieve 1H6T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H6T from S2C, [Save to disk]
  • View 1H6T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H6T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H6T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h6ta1, region A:241-321 [Jmol] [rasmolscript] [script source]
        - Domain d1h6ta2, region A:31-240 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h6t] [1h6t_A]
  • SWISS-PROT database: [P25147]
  • Domain organization of [INLB_LISMO] by SWISSPFAM
  • Domain found in 1H6T: [LRR ] by SMART
  • Other resources with information on 1H6T
  • Community annotation for 1H6T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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