1H8E Hydrolase date Feb 02, 2001
title Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic S Occupied)
authors R.I.Menz, J.E.Walker, A.G.W.Leslie
compound source
Molecule: Bovine Mitochondrial F1-Atpase
Chain: A, B, C
Synonym: Atp Synthase Alpha Chain Heart Isoform
Ec: 3.6.1.34
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: D, E, F
Synonym: Atp Synthase Beta Chain
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: G
Synonym: Atp Synthase Gamma Chain
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: H
Synonym: Atp Synthase Delta Chain
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase
Chain: I
Synonym: Atp Synthase Epsilon Chain
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
267.700 106.200 138.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADP, ALF, GOL, MG, SO4 enzyme Hydrolase E.C.3.6.1.34 BRENDA
note 1H8E is a representative structure
related structures by homologous chain: 1E79, 1W0J
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


F, E, D


G


H


I


Primary referenceStructure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis., Menz RI, Walker JE, Leslie AG, Cell 2001 Aug 10;106(3):331-41. PMID:11509182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (1h8e.pdb1.gz) 519 Kb
  • LPC: Ligand-Protein Contacts for 1H8E
  • CSU: Contacts of Structural Units for 1H8E
  • Likely Quarternary Molecular Structure file(s) for 1H8E
  • Structure Factors (1722 Kb)
  • Retrieve 1H8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H8E from S2C, [Save to disk]
  • Re-refined 1h8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1H8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1H8E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H8E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h8ea2, region A:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ea1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ea3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1h8eb2, region B:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1h8eb1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1h8eb3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ec2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ec1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ec3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ed1, region D:358-475 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ed3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ed2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ee1, region E:358-464 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ee3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ee2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ef1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ef3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1h8ef2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1h8eg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1h8eh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1h8ei_, region I [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h8e_I] [1h8e] [1h8e_A] [1h8e_F] [1h8e_D] [1h8e_G] [1h8e_H] [1h8e_E] [1h8e_B] [1h8e_C]
  • SWISS-PROT database: [P05632] [P19483] [P00829] [P05630] [P05631]
  • Domain organization of [ATP5E_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPD_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1H8E: [AAA ] by SMART
    • Other resources with information on 1H8E
  • Community annotation for 1H8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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