1H8G Choline-Binding Domain date Feb 06, 2001
title C-Terminal Domain Of The Major Autolysin (C-Lyta) From Strep Pneumoniae
authors C.Fernandez-Tornero, E.Garcia, R.Lopez, G.Gimenez-Gallego, A.Rom
compound source
Molecule: Major Autolysin
Chain: A, B
Fragment: Choline-Binding Domain
Synonym: C-Lyta, Cell Wall Binding Domain
Ec: 3.5.1.28
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Cellular_location: Extracellular
Gene: Lyta
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pce17
symmetry Space Group: P 41 21 2
R_factor 0.219 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.571 97.571 68.482 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CHT, MSE enzyme Hydrolase E.C.3.5.1.28 BRENDA
related structures by homologous chain: 2BML
Primary referenceA novel solenoid fold in the cell wall anchoring domain of the pneumococcal virulence factor LytA., Fernandez-Tornero C, Lopez R, Garcia E, Gimenez-Gallego G, Romero A, Nat Struct Biol 2001 Dec;8(12):1020-4. PMID:11694890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1h8g.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1H8G
  • CSU: Contacts of Structural Units for 1H8G
  • Likely Quarternary Molecular Structure file(s) for 1H8G
  • Structure Factors (106 Kb)
  • Retrieve 1H8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H8G from S2C, [Save to disk]
  • Re-refined 1h8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H8G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H8G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h8ga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h8gb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h8g_B] [1h8g] [1h8g_A]
  • SWISS-PROT database: [P06653]
  • Domain organization of [ALYS_STRPN] by SWISSPFAM
  • Other resources with information on 1H8G
  • Community annotation for 1H8G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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