1H9A Oxidoreductase (Choh(D) - Nad(P)) date Mar 06, 2001
title Complex Of Active Mutant (Q365->C) Of Glucose 6-Phosphate Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
authors M.J.Adams, C.E.Naylor, S.Gover
compound source
Molecule: Glucose 6-Phosphate 1-Dehydrogenase
Chain: A
Synonym: G6pd
Ec: 1.1.1.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Leuconostoc Mesenteroides
Organism_taxid: 1245
Gene: G6pd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Su294
Expression_system_plasmid: Plmz
Expression_system_gene: G6pd
Other_details: Site Directed Mutagenesis
symmetry Space Group: P 62 2 2
R_factor 0.187 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.700 136.700 121.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.16 Å
ligand NAP, SO4 enzyme Oxidoreductase E.C.1.1.1.49 BRENDA
related structures by homologous chain: 1DPG, 1H93
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNADP+ and NAD+ binding to the dual coenzyme specific enzyme Leuconostoc mesenteroides glucose 6-phosphate dehydrogenase: different interdomain hinge angles are seen in different binary and ternary complexes., Naylor CE, Gover S, Basak AK, Cosgrove MS, Levy HR, Adams MJ, Acta Crystallogr D Biol Crystallogr 2001 May;57(Pt 5):635-48. PMID:11320304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1h9a.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1H9A
  • CSU: Contacts of Structural Units for 1H9A
  • Likely Quarternary Molecular Structure file(s) for 1H9A
  • Structure Factors (324 Kb)
  • Retrieve 1H9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H9A from S2C, [Save to disk]
  • Re-refined 1h9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H9A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h9aa1, region A:1-181,A:413-426 [Jmol] [rasmolscript] [script source]
        - Domain d1h9aa2, region A:182-412,A:427-485 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h9a_A] [1h9a]
  • SWISS-PROT database: [P11411]
  • Domain organization of [G6PD_LEUME] by SWISSPFAM
  • Other resources with information on 1H9A
  • Community annotation for 1H9A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1H9A from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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