1HAN Oxidoreductase (Oxygenase) date Aug 30, 1995
title Crystal Structure Of The Biphenyl-Cleaving Extradiol Dioxyge A Pcb-Degrading Pseudomonad
authors S.Han, J.T.Bolin
compound source
Molecule: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase
Chain: A
Synonym: Biphenyl-2,3-Diol 1,2-Dioxygenase, Dhbd, Bphc
Ec: 1.13.11.39
Engineered: Yes
Mutation: Yes
Other_details: Fe(II) Form Under Anaerobic Conditions
Organism_scientific: Burkholderia Xenovorans
Organism_taxid: 266265
Strain: Lb400
Gene: Bphc
Expression_system: Burkholderia Cepacia
Expression_system_taxid: 292
Expression_system_plasmid: Plebd4
Expression_system_gene: Bphc
Other_details: Hyperexpressed In The Parent Strain
symmetry Space Group: I 4 2 2
R_factor 0.162 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.580 122.580 111.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FE, TBU enzyme Oxidoreductase E.C.1.13.11.39 BRENDA
related structures by homologous chain: 1KND, 1LGT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad., Han S, Eltis LD, Timmis KN, Muchmore SW, Bolin JT, Science 1995 Nov 10;270(5238):976-80. PMID:7481800
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1han.pdb1.gz) 366 Kb
  • LPC: Ligand-Protein Contacts for 1HAN
  • CSU: Contacts of Structural Units for 1HAN
  • Likely Quarternary Molecular Structure file(s) for 1HAN
  • Retrieve 1HAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HAN from S2C, [Save to disk]
  • View 1HAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HAN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HAN, from MSDmotif at EBI
  • Genome occurence of 1HAN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1han_2, region 133-289 [Jmol] [rasmolscript] [script source]
        - Domain d1han_1, region 2-132 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1han_A] [1han]
  • SWISS-PROT database: [P47228]
  • Domain organization of [BPHC_BURXL] by SWISSPFAM
  • Other resources with information on 1HAN
  • Community annotation for 1HAN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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