1HBW Solution nmr structure of the dimerization domain of the yeast transcriptional activator Gal4 (residues 50-106) date
authors Hidalgo, P., Ansari, A.Z., Schmidt, P., Hare, B., Simkovic, N., Farrell, S., Shin, E.J., Ptashne, M., Wagner, G.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 17 Modelsresolution
note 1HBW is a representative structure
Primary referenceRecruitment of the transcriptional machinery through GAL11P: structure and interactions of the GAL4 dimerization domain., Hidalgo P, Ansari AZ, Schmidt P, Hare B, Simkovich N, Farrell S, Shin EJ, Ptashne M, Wagner G, Genes Dev 2001 Apr 15;15(8):1007-20. PMID:11316794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (1hbw.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1HBW
  • Original NMR restraints for 1HBW from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HBW from S2C, [Save to disk]
  • View 1HBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HBW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HBW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hbwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hbwb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hbw_B] [1hbw_A] [1hbw]
  • SWISS-PROT database: [P04386]
  • Domain organization of [GAL4_YEAST] by SWISSPFAM
  • Other resources with information on 1HBW
  • Community annotation for 1HBW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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