1HCX Choline-Binding Domain date May 10, 2001
title Choline Binding Domain Of The Major Autolysin (C-Lyta) From Streptococcus Pneumoniae
authors C.Fernandez-Tornero, R.Lopez, E.Garcia, G.Gimenez-Gallego, A.Rom
compound source
Molecule: Major Autolysin
Chain: A, B
Fragment: Choline-Binding Domain
Synonym: C-Lyta, Cell Wall Binding Domain
Ec: 3.5.1.28
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Cellular_location: Extracellular
Gene: Lyta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rb791
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pce17
symmetry Space Group: I 2 2 2
R_factor 0.239 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.049 118.177 104.859 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CHT, DDQ, TPT enzyme Hydrolase E.C.3.5.1.28 BRENDA
related structures by homologous chain: 1GVM, 2BML
Primary referenceA novel solenoid fold in the cell wall anchoring domain of the pneumococcal virulence factor LytA., Fernandez-Tornero C, Lopez R, Garcia E, Gimenez-Gallego G, Romero A, Nat Struct Biol 2001 Dec;8(12):1020-4. PMID:11694890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1hcx.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1HCX
  • CSU: Contacts of Structural Units for 1HCX
  • Likely Quarternary Molecular Structure file(s) for 1HCX
  • Retrieve 1HCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HCX from S2C, [Save to disk]
  • View 1HCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HCX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HCX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hcxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hcxb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hcx] [1hcx_B] [1hcx_A]
  • SWISS-PROT database: [P06653]
  • Domain organization of [ALYS_STRPN] by SWISSPFAM
  • Other resources with information on 1HCX
  • Community annotation for 1HCX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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