1HEH Hydrolase(Xylan Degradation) date Nov 22, 2000
title C-Terminal Xylan Binding Domain From Cellulomonas Fimi Xylan
authors P.J.Simpson, X.Hefang, D.N.Bolam, P.White, S.M.Hancock, H.J.Gilbe M.P.Williamson
compound source
Molecule: Endo-1,4-Beta-Xylanase D
Chain: C
Fragment: Xylan Binding Domain 2
Synonym: Xylanase D, Cbm2b-2, Xbd2
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Cellulomonas Fimi
Organism_taxid: 1708
Strain: Jm83
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1HEJ
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceEvidence for synergy between family 2b carbohydrate binding modules in Cellulomonas fimi xylanase 11A., Bolam DN, Xie H, White P, Simpson PJ, Hancock SM, Williamson MP, Gilbert HJ, Biochemistry 2001 Feb 27;40(8):2468-77. PMID:11327868
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1heh.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1HEH
  • Original NMR restraints for 1HEH from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HEH from S2C, [Save to disk]
  • View 1HEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HEH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HEH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hehc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1heh] [1heh_C]
  • SWISS-PROT database: [P54865]
  • Domain organization of [XYND_CELFI] by SWISSPFAM
  • Domain found in 1HEH: [CBD_II ] by SMART
  • Other resources with information on 1HEH
  • Community annotation for 1HEH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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