1HHH Histocompatibility Antigen date Jun 30, 1993
title The Antigenic Identity Of Peptide(Slash)Mhc Complexes: A Comparison Of The Conformation Of Five Peptides Presented By Hla-A2
authors D.R.Madden, D.N.Garboczi, D.C.Wiley
compound source
Molecule: Class I Histocompatibility Antigen (Hla-A0201) (Alpha Chain);
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Beta-2-Microglobulin
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta 2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Beta-2-Microglobulin
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hepatitis B Nucleocapsid Protein (Residues 18- 27);
Chain: C
Engineered: Yes

Organism_scientific: Hepatitis B Virus
Organism_taxid: 10407
symmetry Space Group: P 21 21 21
R_factor 0.286 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.630 81.240 94.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
note 1HHH (Molecule of the Month:pdb62)
related structures by homologous chain: 1JNJ, 1N3N
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceThe antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2., Madden DR, Garboczi DN, Wiley DC, Cell 1993 Nov 19;75(4):693-708. PMID:7694806
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1hhh.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 1HHH
  • Likely Quarternary Molecular Structure file(s) for 1HHH
  • Retrieve 1HHH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HHH from S2C, [Save to disk]
  • View 1HHH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HHH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HHH, from MSDmotif at EBI
  • Genome occurence of 1HHH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hhha2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1hhha1, region A:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1hhhb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hhh_A] [1hhh_C] [1hhh] [1hhh_B]
  • SWISS-PROT database: [P01892] [P61769] [P12901]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] [CAPSD_HBVCP] by SWISSPFAM
  • Domain found in 1HHH: [IGc1 ] by SMART
  • Other resources with information on 1HHH
  • Community annotation for 1HHH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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