1HI5 Hydrolase date Jan 02, 2001
title Eosinophil-Derived Neurotoxin (Edn) - Adenosine-5'-Diphospha
authors D.D.Leonidas, E.Boix, R.Prill, M.Suzuki, R.Turton, K.Minson, G.J.Swaminathan, R.J.Youle, K.R.Acharya
compound source
Molecule: Eosinophil-Derived Neurotoxin
Chain: A
Synonym: Rnase-2, Rnase-Us, Edn
Ec: 3.1.27.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Eosinophil
Organelle: Granule
Cellular_location: Secretory Granules
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.646 56.318 41.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ADP enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1DYT, 1HI3
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


  • Primary referenceMapping the ribonucleolytic active site of eosinophil-derived neurotoxin (EDN). High resolution crystal structures of EDN complexes with adenylic nucleotide inhibitors., Leonidas DD, Boix E, Prill R, Suzuki M, Turton R, Minson K, Swaminathan GJ, Youle RJ, Acharya KR, J Biol Chem 2001 May 4;276(18):15009-17. PMID:11154698
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1hi5.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1HI5
  • CSU: Contacts of Structural Units for 1HI5
  • Likely Quarternary Molecular Structure file(s) for 1HI5
  • Retrieve 1HI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HI5 from S2C, [Save to disk]
  • View 1HI5 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 1HI5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HI5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hi5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hi5] [1hi5_A]
  • SWISS-PROT database: [P10153]
  • Domain organization of [RNAS2_HUMAN] by SWISSPFAM
  • Domain found in 1HI5: [RNAse_Pc ] by SMART
  • Other resources with information on 1HI5
  • Community annotation for 1HI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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