1HIY	Transferase	date	Jan 05, 2001
title	Binding Of Nucleotides To Ndp Kinase
authors	L.Cervoni, I.Lascu, Y.Xu, P.Gonin, M.Morr, M.Merouani, J.Janin, A.G
compound		source
Molecule: Nucleoside Diphosphate Kinase Chain: A, B, C Ec: 2.7.4.6 Engineered: Yes Other_details: 3'Amino-Adp		Organism_scientific: Dictyostelium Discoideum Organism_taxid: 44689 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.220 R_Free 0.325
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.620 71.620 153.800 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	3AN	enzyme	Transferase E.C.2.7.4.6 BRENDA
related structures	by homologous chain: 1LEO, 1PAE
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Binding of nucleotides to nucleoside diphosphate kinase: a calorimetric study., Cervoni L, Lascu I, Xu Y, Gonin P, Morr M, Merouani M, Janin J, Giartosio A, Biochemistry 2001 Apr 17;40(15):4583-9. PMID:11294625

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (1hiy.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 1HIY CSU: Contacts of Structural Units for 1HIY Likely Quarternary Molecular Structure file(s) for 1HIY Structure Factors (173 Kb) Retrieve 1HIY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HIY from S2C, [Save to disk] Re-refined 1hiy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HIY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HIY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HIY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hiya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1hiyb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1hiyc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hiy_C] [1hiy_B] [1hiy_A] [1hiy] SWISS-PROT database: [P22887] Domain organization of [NDKC_DICDI] by SWISSPFAM Domain found in 1HIY: [NDK ] by SMART

Other resources with information on 1HIY

Community annotation for 1HIY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---