1HOM Dna Binding Protein date Oct 08, 1991
title Determination Of The Three-Dimensional Structure Of The Ante Homeodomain From Drosophila In Solution By 1h Nuclear Magne Resonance Spectroscopy
authors Y.Q.Qian, M.Billeter, G.Otting, M.Muller, W.J.Gehring, K.Wuthric
compound source
Molecule: Antennapedia Protein
Chain: A
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1FTZ, 2HOA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDetermination of the three-dimensional structure of the Antennapedia homeodomain from Drosophila in solution by 1H nuclear magnetic resonance spectroscopy., Billeter M, Qian Y, Otting G, Muller M, Gehring WJ, Wuthrich K, J Mol Biol 1990 Jul 5;214(1):183-97. PMID:2164583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (1hom.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1HOM
  • Original NMR restraints for 1HOM from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HOM from S2C, [Save to disk]
    • View 1HOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HOM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HOM, from MSDmotif at EBI
  • Genome occurence of 1HOM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hom__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hom] [1hom_A]
  • SWISS-PROT database: [P02833]
  • Domain organization of [ANTP_DROME] by SWISSPFAM
  • Domain found in 1HOM: [HOX ] by SMART
    • Other resources with information on 1HOM
  • Community annotation for 1HOM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1HOM from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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