1HQB Transport Protein date Dec 14, 2000
title Tertiary Structure Of Apo-D-Alanyl Carrier Protein
authors B.F.Volkman, Q.Zhang, D.V.Debabov, E.Rivera, G.Kresheck, F.C.Neuh
compound source
Molecule: Apo-D-Alanyl Carrier Protein
Chain: A
Fragment: Residues 2-81
Synonym: Apo-Dcp
Engineered: Yes
Organism_scientific: Lactobacillus Casei
Organism_taxid: 1582
Gene: Dltc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdcp1
methodSolution NMR
related structures by homologous chain: 1DV5
Gene
Ontology
ChainFunctionProcessComponent
A
  • D-alanyl carrier activity


  • Primary referenceBiosynthesis of D-alanyl-lipoteichoic acid: the tertiary structure of apo-D-alanyl carrier protein., Volkman BF, Zhang Q, Debabov DV, Rivera E, Kresheck GC, Neuhaus FC, Biochemistry 2001 Jul 10;40(27):7964-72. PMID:11434765
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1hqb.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1HQB
  • Original NMR restraints for 1HQB from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1HQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HQB from S2C, [Save to disk]
  • View 1HQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HQB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HQB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hqba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hqb_A] [1hqb]
  • SWISS-PROT database: [P55153]
  • Domain organization of [DLTC_LACRH] by SWISSPFAM
  • Other resources with information on 1HQB
  • Community annotation for 1HQB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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