1HQV	Apoptosis	date	Dec 19, 2000
title	Structure Of Apoptosis-Linked Protein Alg-2
authors	J.Jia, S.Tarabykina, C.Hansen, M.Berchtold, M.Cygler
compound		source
Molecule: Programmed Cell Death Protein 6 Chain: A Synonym: Probable Calcium-Binding Protein Alg-2 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pgemexii
symmetry	Space Group: P 41 2 2	R_factor 0.250 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.060 72.060 91.520 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A protein binding, bridging in... COPII vesicle coating
Primary reference	Structure of apoptosis-linked protein ALG-2: insights into Ca2+-induced changes in penta-EF-hand proteins., Jia J, Tarabykina S, Hansen C, Berchtold M, Cygler M, Structure (Camb) 2001 Apr 4;9(4):267-75. PMID:11525164

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk] Biological Unit Coordinates (1hqv.pdb1.gz) 60 Kb Biological Unit Coordinates (1hqv.pdb2.gz) 60 Kb Biological Unit Coordinates (1hqv.pdb3.gz) 60 Kb LPC: Ligand-Protein Contacts for 1HQV CSU: Contacts of Structural Units for 1HQV Likely Quarternary Molecular Structure file(s) for 1HQV Structure Factors (83 Kb) Retrieve 1HQV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HQV from S2C, [Save to disk] Re-refined 1hqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HQV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HQV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HQV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hqva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hqv] [1hqv_A] SWISS-PROT database: [P12815] Domain organization of [PDCD6_MOUSE] by SWISSPFAM Domain found in 1HQV: [EFh ] by SMART

Other resources with information on 1HQV

Community annotation for 1HQV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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