1HRD Oxidoreductase date Apr 03, 1996
title Glutamate Dehydrogenase
authors K.L.Britton, P.J.Baker, T.J.Stillman, D.W.Rice
compound source
Molecule: Glutamate Dehydrogenase
Chain: A, B, C
Ec: 1.4.1.2
Organism_scientific: Clostridium Symbiosum
Organism_taxid: 1512
Strain: Hb25
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.100 151.300 94.600 90.00 132.75 90.00
method X-Ray Diffractionresolution 1.96 Å
ligand
enzyme Oxidoreductase E.C.1.4.1.2 BRENDA
related structures by homologous chain: 1BGV, 1K89
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe structure of Pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures., Yip KS, Stillman TJ, Britton KL, Artymiuk PJ, Baker PJ, Sedelnikova SE, Engel PC, Pasquo A, Chiaraluce R, Consalvi V, Structure 1995 Nov 15;3(11):1147-58. PMID:8591026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (1hrd.pdb1.gz) 428 Kb
  • CSU: Contacts of Structural Units for 1HRD
  • Likely Quarternary Molecular Structure file(s) for 1HRD
  • Retrieve 1HRD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HRD from S2C, [Save to disk]
  • View 1HRD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HRD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HRD, from MSDmotif at EBI
  • Genome occurence of 1HRD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hrda2, region A:1-194 [Jmol] [rasmolscript] [script source]
        - Domain d1hrda1, region A:195-449 [Jmol] [rasmolscript] [script source]
        - Domain d1hrdb2, region B:1-194 [Jmol] [rasmolscript] [script source]
        - Domain d1hrdb1, region B:195-449 [Jmol] [rasmolscript] [script source]
        - Domain d1hrdc2, region C:1-194 [Jmol] [rasmolscript] [script source]
        - Domain d1hrdc1, region C:195-449 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hrd_B] [1hrd] [1hrd_C] [1hrd_A]
  • SWISS-PROT database: [P24295]
  • Domain organization of [DHE2_CLOSY] by SWISSPFAM
  • Domain found in 1HRD: [ELFV_dehydrog ] by SMART
  • Other resources with information on 1HRD
  • Community annotation for 1HRD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HRD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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