1HTN Lectin date May 28, 1997
title Human Tetranectin, A Trimeric Plasminogen Binding Protein Wi Alpha-Helical Coiled Coil
authors B.B.Nielsen, J.S.Kastrup, H.Rasmussen, T.L.Holtet, J.H.Graversen M.Etzerodt, H.C.Thogersen, I.K.Larsen
compound source
Molecule: Tetranectin
Chain: A
Fragment: Residues 26 - 181
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh
Expression_system_plasmid: Pt7h6
symmetry Space Group: H 3
R_factor 0.223 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.140 89.140 75.770 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme
related structures by homologous chain: 1RJH, 1TN3
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of tetranectin, a trimeric plasminogen-binding protein with an alpha-helical coiled coil., Nielsen BB, Kastrup JS, Rasmussen H, Holtet TL, Graversen JH, Etzerodt M, Thogersen HC, Larsen IK, FEBS Lett 1997 Jul 28;412(2):388-96. PMID:9256258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1htn.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1HTN
  • CSU: Contacts of Structural Units for 1HTN
  • Likely Quarternary Molecular Structure file(s) for 1HTN
  • Structure Factors (45 Kb)
  • Retrieve 1HTN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HTN from S2C, [Save to disk]
  • Re-refined 1htn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HTN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HTN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HTN, from MSDmotif at EBI
  • Genome occurence of 1HTN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1htn_2, region 26-53 [Jmol] [rasmolscript] [script source]
        - Domain d1htn_1, region 54-181 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1htn] [1htn_A]
  • SWISS-PROT database: [P05452]
  • Domain organization of [TETN_HUMAN] by SWISSPFAM
  • Domain found in 1HTN: [CLECT ] by SMART
  • Other resources with information on 1HTN
  • Community annotation for 1HTN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science