1HU9 Oxidoreductase date Jan 04, 2001
title Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-Methox
authors K.Zhou, E.Skrzypczak-Jankun, N.P.Mccabe, S.H.Selman, J.Jankun
compound source
Molecule: Lipoxygenase-3
Chain: A
Synonym: L-3
Ec: 1.13.11.12
Other_details: Complex With 4-Hydroperoxy-2-Methoxy-Phenol Photodegredation Product Of Curcumin
Organism_scientific: Glycine Max
Organism_common: Soybean
Organism_taxid: 3847
Strain: Beeson-80 Cultivar
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.790 137.320 61.870 90.00 95.55 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 4HM, FE enzyme Oxidoreductase E.C.1.13.11.12 BRENDA
related structures by homologous chain: 1NO3, 2SBL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of curcumin in complex with lipoxygenase and its significance in cancer., Skrzypczak-Jankun E, Zhou K, McCabe NP, Selman SH, Jankun J, Int J Mol Med 2003 Jul;12(1):17-24. PMID:12792803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (1hu9.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1HU9
  • CSU: Contacts of Structural Units for 1HU9
  • Likely Quarternary Molecular Structure file(s) for 1HU9
  • Structure Factors (344 Kb)
  • Retrieve 1HU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HU9 from S2C, [Save to disk]
  • Re-refined 1hu9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HU9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HU9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hu9a1, region A:168-857 [Jmol] [rasmolscript] [script source]
        - Domain d1hu9a2, region A:9-167 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hu9_A] [1hu9]
  • SWISS-PROT database: [P09186]
  • Domain organization of [LOX3_SOYBN] by SWISSPFAM
  • Domain found in 1HU9: [LH2 ] by SMART
  • Other resources with information on 1HU9
  • Community annotation for 1HU9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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