1HV2 Signaling Protein date Jan 05, 2001
title Solution Structure Of Yeast Elongin C In Complex With A Von Lindau Peptide
authors M.V.Botuyan, G.Mer, G.S.Yi, C.M.Koth, D.A.Case, A.M.Edwards, W.J. C.H.Arrowsmith
compound source
Molecule: Elongin C
Chain: A
Synonym: Elc1
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Von Hippel-Lindau Disease Tumor Suppressor
Chain: B
Fragment: Residues 157-171
Synonym: G7 Protein
Engineered: Yes
Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin-protein transferas...


    • Primary referenceSolution structure and dynamics of yeast elongin C in complex with a von Hippel-Lindau peptide., Botuyan MV, Mer G, Yi GS, Koth CM, Case DA, Edwards AM, Chazin WJ, Arrowsmith CH, J Mol Biol 2001 Sep 7;312(1):177-86. PMID:11545595
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (620 Kb) [Save to disk]
  • Biological Unit Coordinates (1hv2.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1HV2
  • Retrieve 1HV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HV2 from S2C, [Save to disk]
    • View 1HV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HV2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HV2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hv2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hv2_B] [1hv2] [1hv2_A]
  • SWISS-PROT database: [Q03071]
  • Domain organization of [ELOC_YEAST] by SWISSPFAM
  • Domain found in 1HV2: [Skp1 ] by SMART
    • Other resources with information on 1HV2
  • Community annotation for 1HV2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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