2HVM Hydrolase date Jul 02, 1996
title Hevamine A At 1.8 Angstrom Resolution
authors A.C.Terwisscha Van Scheltinga, M.Hennig, B.W.Dijkstra
compound source
Molecule: Hevamine
Chain: A
Synonym: Chitinaselysozyme
Ec: 3.2.1.14, 3.2.1.17
Organism_scientific: Hevea Brasiliensis
Organism_taxid: 3981
Tissue: Latex
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.300 57.720 82.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.2.1.14 BRENDA
note 2HVM supersedes 1HVM
related structures by homologous chain: 1LLO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.8 A resolution structure of hevamine, a plant chitinase/lysozyme, and analysis of the conserved sequence and structure motifs of glycosyl hydrolase family 18., Terwisscha van Scheltinga AC, Hennig M, Dijkstra BW, J Mol Biol 1996 Sep 20;262(2):243-57. PMID:8831791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2hvm.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 2HVM
  • Likely Quarternary Molecular Structure file(s) for 2HVM
  • Structure Factors (169 Kb)
  • Retrieve 2HVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HVM from S2C, [Save to disk]
  • Re-refined 2hvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HVM, from MSDmotif at EBI
  • Genome occurence of 2HVM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hvm__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hvm_A] [2hvm]
  • SWISS-PROT database: [P23472]
  • Domain organization of [CHLY_HEVBR] by SWISSPFAM
  • Domain found in 2HVM: [Glyco_18 ] by SMART
  • Other resources with information on 2HVM
  • Community annotation for 2HVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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