1HXK Hydrolase date Jan 16, 2001
title Golgi Alpha-Mannosidase II In Complex With Deoxymannojirimic
authors J.M.H.Van Den Elsen, D.A.Kuntz, D.R.Rose
compound source
Molecule: Alpha-Mannosidase II
Chain: A
Synonym: Golgi Alpha-Mannosidase II
Ec: 3.2.1.114
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell: S2
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.814 109.616 138.281 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand DMJ, MRD, NAG, ZN enzyme Hydrolase E.C.3.2.1.114 BRENDA
related structures by homologous chain: 1HTY, 1R33
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Golgi alpha-mannosidase II: a target for inhibition of growth and metastasis of cancer cells., van den Elsen JM, Kuntz DA, Rose DR, EMBO J 2001 Jun 15;20(12):3008-17. PMID:11406577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (1hxk.pdb1.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 1HXK
  • CSU: Contacts of Structural Units for 1HXK
  • Likely Quarternary Molecular Structure file(s) for 1HXK
  • Structure Factors (1420 Kb)
  • Retrieve 1HXK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HXK from S2C, [Save to disk]
  • Re-refined 1hxk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HXK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HXK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1HXK from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HXK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hxka3, region A:31-411 [Jmol] [rasmolscript] [script source]
        - Domain d1hxka1, region A:412-522 [Jmol] [rasmolscript] [script source]
        - Domain d1hxka2, region A:523-1044 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hxk] [1hxk_A]
  • SWISS-PROT database: [Q24451]
  • Domain organization of [MAN2_DROME] by SWISSPFAM
  • Domain found in 1HXK: [Alpha-mann_mid ] by SMART
  • Other resources with information on 1HXK
  • Community annotation for 1HXK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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