1HYE	Oxidoreductase	date	Jan 19, 2001
title	Crystal Structure Of The Mj0490 Gene Product, The Family Of Lactatemalate Dehydrogenase, Dimeric Structure
authors	B.I.Lee, C.Chang, S.J.Cho, S.W.Suh
compound		source
Molecule: L-Lactatemalate Dehydrogenase Chain: A Ec: 1.1.1.27 Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Gene: Mj0490 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 21 21 2	R_factor 0.194 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.647 125.101 58.082 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	NAP	enzyme	Oxidoreductase E.C.1.1.1.27 BRENDA
related structures	by homologous chain: 1HYG
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate/malate family of dehydrogenases., Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW, J Mol Biol 2001 Apr 13;307(5):1351-62. PMID:11292347

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1hye.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 1HYE CSU: Contacts of Structural Units for 1HYE Likely Quarternary Molecular Structure file(s) for 1HYE Structure Factors (195 Kb) Retrieve 1HYE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HYE from S2C, [Save to disk] Re-refined 1hye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HYE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HYE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HYE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hyea1, region A:1-145 [Jmol] [rasmolscript] [script source]     - Domain d1hyea2, region A:146-313 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hye] [1hye_A] SWISS-PROT database: [Q60176] Domain organization of [MDH_METJA] by SWISSPFAM

Other resources with information on 1HYE

Community annotation for 1HYE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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