1HYS Transferase Dna-Rna Hybrid date Jan 22, 2001
title Crystal Structure Of Hiv-1 Reverse Transcriptase In Complex Polypurine Tract Rna:Dna
authors S.G.Sarafianos, K.Das, C.Tantillo, A.D.Clark Jr., J.Ding, J.Whitc P.L.Boyer, S.H.Hughes, E.Arnold
compound source
Molecule: 5'-R(Upcpapgpcpcpapcpupupupupupapa Apapapapg)-3';
Chain: E
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Cptptptptpcptptptptpapapapapa Gpcptpg)-3';
Chain: F
Engineered: Yes

Synthetic: Yes

Molecule: Hiv-1 Reverse Transcriptase
Chain: A
Fragment: P66
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Hiv-1 Reverse Transcriptase
Chain: B
Fragment: P51
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Fab-28 Monoclonal Antibody Fragment Light Chain
Chain: C

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Fab-28 Monoclonal Antibody Fragment Heavy Chain
Chain: D

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 32 1 2
R_factor 0.274 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.160 166.160 218.810 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1F3R, 1N6Q, 1OTT, 1RDH, 1RT3
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA., Sarafianos SG, Das K, Tantillo C, Clark AD Jr, Ding J, Whitcomb JM, Boyer PL, Hughes SH, Arnold E, EMBO J 2001 Mar 15;20(6):1449-61. PMID:11250910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (1hys.pdb1.gz) 240 Kb
  • CSU: Contacts of Structural Units for 1HYS
  • Likely Quarternary Molecular Structure file(s) for 1HYS
  • Structure Factors (429 Kb)
  • Retrieve 1HYS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HYS from S2C, [Save to disk]
  • Re-refined 1hys structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HYS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HYS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HYS, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hysa2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1hysa1, region A:430-553 [Jmol] [rasmolscript] [script source]
        - Domain d1hysb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hysc1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1hysc2, region C:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1hysd1, region D:1-123 [Jmol] [rasmolscript] [script source]
        - Domain d1hysd2, region D:124-220 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hys_D] [1hys_B] [1hys_A] [1hys_F] [1hys_E] [1hys_C] [1hys]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
  • Domains found in 1HYS: [IG_like] [IGv ] by SMART
  • Other resources with information on 1HYS
  • Community annotation for 1HYS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HYS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science