1I12 Transferase date Jan 30, 2001
title Crystal Structure Of Saccharomyces Cerevisiae Gna1 Complexed Accoa
authors C.Peneff, D.Mengin-Lecreulx, Y.Bourne
compound source
Molecule: Glucosamine-Phosphate N-Acetyltransferase
Chain: A, B, C, D
Synonym: Phosphoglucosamine Transacetylase; Phosphoglucosam Acetylase;
Ec: 2.3.1.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Yfl017c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15 (Prep4)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.559 51.842 92.232 90.00 107.81 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand ACO, IMD enzyme Transferase E.C.2.3.1.4 BRENDA
note 1I12 is a representative structure
related structures by homologous chain: 1I1D
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structures of Apo and complexed Saccharomyces cerevisiae GNA1 shed light on the catalytic mechanism of an amino-sugar N-acetyltransferase., Peneff C, Mengin-Lecreulx D, Bourne Y, J Biol Chem 2001 May 11;276(19):16328-34. PMID:11278591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1i12.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1i12.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1I12
  • CSU: Contacts of Structural Units for 1I12
  • Likely Quarternary Molecular Structure file(s) for 1I12
  • Structure Factors (1353 Kb)
  • Retrieve 1I12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I12 from S2C, [Save to disk]
  • Re-refined 1i12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I12
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1I12 1I12A 1I12B 1I12C 1I12D from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I12, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i12a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1i12b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1i12c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1i12d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i12_A] [1i12_C] [1i12_D] [1i12_B] [1i12]
  • SWISS-PROT database: [P43577]
  • Domain organization of [GNA1_YEAST] by SWISSPFAM
  • Other resources with information on 1I12
  • Community annotation for 1I12 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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