1I1X Hydrolase date Feb 04, 2001
title 1.11 A Atomic Resolution Structure Of A Thermostable Xylanas Thermoascus Aurantiacus
authors R.Natesh, S.Ramakumar, M.A.Viswamitra
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Synonym: Xylanase, 1,4-Beta-D-Xylan Xylanohydrolase
Ec: 3.2.1.8
Organism_scientific: Thermoascus Aurantiacus
Organism_taxid: 5087
Strain: Strain Isolated From Local Indian Soil
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.520 68.090 51.440 90.00 113.56 90.00
method X-Ray Diffractionresolution 1.11 Å
ligand PCA enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1I1W, 1K6A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThermostable xylanase from Thermoascus aurantiacus at ultrahigh resolution (0.89 A) at 100 K and atomic resolution (1.11 A) at 293 K refined anisotropically to small-molecule accuracy., Natesh R, Manikandan K, Bhanumoorthy P, Viswamitra MA, Ramakumar S, Acta Crystallogr D Biol Crystallogr 2003 Jan 1;59(Pt 1):105-17. PMID:12499546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (1i1x.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 1I1X
  • CSU: Contacts of Structural Units for 1I1X
  • Likely Quarternary Molecular Structure file(s) for 1I1X
  • Structure Factors (624 Kb)
  • Retrieve 1I1X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I1X from S2C, [Save to disk]
  • Re-refined 1i1x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I1X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I1X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1I1X from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I1X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i1xa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i1x_A] [1i1x]
  • SWISS-PROT database: [P23360]
  • Domain organization of [XYNA_THEAU] by SWISSPFAM
  • Domain found in 1I1X: [Glyco_10 ] by SMART
  • Other resources with information on 1I1X
  • Community annotation for 1I1X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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