1I29	Lyase	date	Feb 07, 2001
title	Crystal Structure Of Csdb Complexed With L-Propargylglycine
authors	H.Mihara, T.Fujii, T.Kurihara, Y.Hata, N.Esaki
compound		source
Molecule: Csdb Chain: A Ec: 4.4.1.16 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Csdb Or Sufs Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc118
symmetry	Space Group: P 43 21 2	R_factor 0.209 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.459 128.459 136.830 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	LPG, PLP	enzyme	Lyase E.C.4.4.1.16 BRENDA
related structures	by homologous chain: 1C0N
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine., Mihara H, Fujii T, Kato S, Kurihara T, Hata Y, Esaki N, J Biochem (Tokyo) 2002 May;131(5):679-85. PMID:11983074

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1i29.pdb1.gz) 124 Kb LPC: Ligand-Protein Contacts for 1I29 CSU: Contacts of Structural Units for 1I29 Likely Quarternary Molecular Structure file(s) for 1I29 Structure Factors (218 Kb) Retrieve 1I29 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1I29 from S2C, [Save to disk] Re-refined 1i29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1I29 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1I29

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1I29, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1i29a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1i29] [1i29_A] SWISS-PROT database: [P77444] Domain organization of [SUFS_ECOLI] by SWISSPFAM

Other resources with information on 1I29

Community annotation for 1I29 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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