1I2W Hydrolase date Feb 12, 2001
title Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed Wit Cefoxitin
authors E.Fonze, M.Vanhove, G.Dive, E.Sauvage, J.M.Frere, P.Charlier
compound source
Molecule: Beta-Lactamase
Chain: A, B
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Bacillus Licheniformis
Organism_taxid: 1402
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P-Et-22(B)Kr
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.344 106.372 63.873 90.00 94.18 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 1QL, OUT enzyme Hydrolase E.C.3.5.2.6 BRENDA
related structures by homologous chain: 1I2S, 4BLM
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the Bacillus licheniformis BS3 class A beta-lactamase and of the acyl-enzyme adduct formed with cefoxitin., Fonze E, Vanhove M, Dive G, Sauvage E, Frere JM, Charlier P, Biochemistry 2002 Feb 12;41(6):1877-85. PMID:11827533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1i2w.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1I2W
  • CSU: Contacts of Structural Units for 1I2W
  • Likely Quarternary Molecular Structure file(s) for 1I2W
  • Structure Factors (488 Kb)
  • Retrieve 1I2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I2W from S2C, [Save to disk]
  • Re-refined 1i2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I2W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I2W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i2wa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1i2wb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i2w] [1i2w_A] [1i2w_B]
  • SWISS-PROT database: [P00808]
  • Domain organization of [BLAC_BACLI] by SWISSPFAM
  • Other resources with information on 1I2W
  • Community annotation for 1I2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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