1I35 Transferase date Feb 13, 2001
title Solution Structure Of The Ras-Binding Domain Of The Protein Byr2 From Schizosaccharomyces Pombe
authors W.Gronwald, F.Huber, P.Grunewald, M.Sporner, S.Wohlgemuth, C.Herr H.R.Kalbitzer
compound source
Molecule: Protein Kinase Byr2
Chain: A
Fragment: Ras-Binding Domain
Ec: 2.7.1.-
Engineered: Yes
 Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Gene: Byr2 (Amino Acids 71 - 165)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B121 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t3 (Pharmacia)
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1K8R
Primary referenceSolution structure of the Ras binding domain of the protein kinase Byr2 from Schizosaccharomyces pombe., Gronwald W, Huber F, Grunewald P, Sporner M, Wohlgemuth S, Herrmann C, Kalbitzer HR, Structure (Camb) 2001 Nov;9(11):1029-41. PMID:11709167
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1i35.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1I35
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1I35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I35 from S2C, [Save to disk]
    • View 1I35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1I35
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I35, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i35a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i35_A] [1i35]
  • SWISS-PROT database: [P28829]
  • Domain organization of [BYR2_SCHPO] by SWISSPFAM
  • Domain found in 1I35: [Ras_bdg_2 ] by SMART
    • Other resources with information on 1I35
  • Community annotation for 1I35 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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