1I60 Structural Genomics, Unknown Function date Mar 01, 2001
title Structural Genomics, Ioli Protein
authors R.Zhang, I.Dementieva, F.Collart, E.Quaite-Randall, A.Joachimiak Center For Structural Genomics (Mcsg)
compound source
Molecule: Ioli Protein
Chain: A
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ioli Or B65b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30xalic
symmetry Space Group: P 21 21 2
R_factor 0.214 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.291 104.771 48.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MSE enzyme
related structures by homologous chain: 1I6N
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Bacillus subtilis ioli shows endonuclase IV fold with altered Zn binding., Zhang RG, Dementieva I, Duke N, Collart F, Quaite-Randall E, Alkire R, Dieckman L, Maltsev N, Korolev O, Joachimiak A, Proteins 2002 Aug 1;48(2):423-6. PMID:12112707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1i60.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1I60
  • CSU: Contacts of Structural Units for 1I60
  • Likely Quarternary Molecular Structure file(s) for 1I60
  • Structure Factors (1566 Kb)
  • Retrieve 1I60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I60 from S2C, [Save to disk]
  • Re-refined 1i60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I60
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I60, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i60a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i60_A] [1i60]
  • SWISS-PROT database: [P42419]
  • Domain organization of [IOLI_BACSU] by SWISSPFAM
  • Other resources with information on 1I60
  • Community annotation for 1I60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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