1I6F Toxin date Mar 02, 2001
title Nmr Solution Structure Of The Insect-Specific Neurotoxin Var (Cse-V5) From The Scorpion Centruroides Sculpturatus Ewing
authors M.J.Jablonsky, P.L.Jackson, N.R.Krishna
compound source
Molecule: Neurotoxin V-5
Chain: A
Synonym: Cse-V5
 Organism_scientific: Centruroides Sculpturatus
Organism_common: Bark Scorpion
Organism_taxid: 218467
Variant: 5
methodSolution NMR
related structures by homologous chain: 1I6G
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceSolution structure of an insect-specific neurotoxin from the New World scorpion Centruroides sculpturatus Ewing., Jablonsky MJ, Jackson PL, Krishna NR, Biochemistry 2001 Jul 27;40(28):8273-82. PMID:11444973
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (1i6f.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1I6F
  • Original NMR restraints for 1I6F from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1I6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I6F from S2C, [Save to disk]
    • View 1I6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1I6F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I6F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i6fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i6f] [1i6f_A]
  • SWISS-PROT database: [P58779]
  • Domain organization of [SCX5_CENSC] by SWISSPFAM
  • Domain found in 1I6F: [Knot1 ] by SMART
    • Other resources with information on 1I6F
  • Community annotation for 1I6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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