1I6J CRYSTAL STRUCTURE OF A PSEUDO-16-MER DNA WITH STACKED GUANINES AND TWO G-A MISPAIRS COMPLEXED WITH THE N-TERMINAL FRAGMENT OF MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE date
authors Cote, M.L., Georgiadis, M.M.
compound source
symmetry
R_factor
R_Free 0.2520000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1MML, 1N4L
Primary referenceStructure of a pseudo-16-mer DNA with stacked guanines and two G-A mispairs complexed with the N-terminal fragment of Moloney murine leukemia virus reverse transcriptase., Cote ML, Georgiadis MM, Acta Crystallogr D Biol Crystallogr 2001 Sep;57(Pt 9):1238-50. PMID:11526315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1i6j.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 1I6J
  • Likely Quarternary Molecular Structure file(s) for 1I6J
  • Structure Factors (200 Kb)
  • Retrieve 1I6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I6J from S2C, [Save to disk]
  • Re-refined 1i6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I6J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i6ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i6j] [1i6j_B] [1i6j_C] [1i6j_A]
  • SWISS-PROT database: [P03355]
  • Domain organization of [POL_MLVMO] by SWISSPFAM
  • Other resources with information on 1I6J
  • Community annotation for 1I6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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