1I7G	Transcription	date	Mar 09, 2001
title	Crystal Structure Of The Ligand Binding Domain From Human Pp In Complex With The Agonist Az 242
authors	J.F.W.Petersen, P.Cronet, R.Folmer, N.Blomberg, K.Sjoblom, U.Karl L.Lindstedt, K.Bamberg
compound		source
Molecule: Peroxisome Proliferator Activated Receptor Alpha Chain: A Fragment: Ligand Binding Domain Synonym: Ppar-Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.237 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.968 76.968 100.592 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	AZ2, CPQ, NA BindingDB	enzyme
related structures	by homologous chain: 1FM6
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the PPARalpha and -gamma ligand binding domain in complex with AZ 242; ligand selectivity and agonist activation in the PPAR family., Cronet P, Petersen JF, Folmer R, Blomberg N, Sjoblom K, Karlsson U, Lindstedt EL, Bamberg K, Structure (Camb) 2001 Aug;9(8):699-706. PMID:11587644

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (1i7g.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 1I7G CSU: Contacts of Structural Units for 1I7G Likely Quarternary Molecular Structure file(s) for 1I7G Retrieve 1I7G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1I7G from S2C, [Save to disk]

View 1I7G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1I7G

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1I7G, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1i7ga_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1i7g] [1i7g_A] SWISS-PROT database: [Q07869] Domain organization of [PPARA_HUMAN] by SWISSPFAM Domain found in 1I7G: [HOLI ] by SMART

Other resources with information on 1I7G

Community annotation for 1I7G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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