1I7J CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL AND MAGNESIUM BINDING. date
authors Adamiak, D.A., Rypniewski, W.R., Milecki, J., Adamiak, R.W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.19
ligand MG, MPD, OMC, OMG enzyme
Primary referenceThe 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove., Adamiak DA, Rypniewski WR, Milecki J, Adamiak RW, Nucleic Acids Res 2001 Oct 15;29(20):4144-53. PMID:11600703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1i7j.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1I7J
  • CSU: Contacts of Structural Units for 1I7J
  • Likely Quarternary Molecular Structure file(s) for 1I7J
  • Structure Factors (75 Kb)
  • Retrieve 1I7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I7J from S2C, [Save to disk]
  • Re-refined 1i7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I7J, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i7j_B] [1i7j_A] [1i7j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1I7J
  • Community annotation for 1I7J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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