1I82 Hydrolase date Mar 12, 2001
title Family 9 Carbohydrate-Binding Module From Thermotoga Maritim 10a With Cellobiose
authors V.Notenboom, A.B.Boraston, R.A.J.Warren, D.G.Kilburn, D.R.Rose
compound source
Molecule: Endo-1,4-Beta-Xylanase A
Chain: A
Fragment: C2 Domain (Residues 871-1059)
Synonym: Xylanase A
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.670 56.670 122.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BGC, CA enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1I8U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms., Notenboom V, Boraston AB, Kilburn DG, Rose DR, Biochemistry 2001 May 29;40(21):6248-56. PMID:11371186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1i82.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1I82
  • CSU: Contacts of Structural Units for 1I82
  • Likely Quarternary Molecular Structure file(s) for 1I82
  • Retrieve 1I82 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I82 from S2C, [Save to disk]
  • View 1I82 in 3D
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  • Visual 3D analysis of 1I82
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I82, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i82a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i82_A] [1i82]
  • SWISS-PROT database: [Q60037]
  • Domain organization of [XYNA_THEMA] by SWISSPFAM
  • Other resources with information on 1I82
  • Community annotation for 1I82 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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