1I9J Immune System date Mar 20, 2001
title Testosterone Complex Structure Of The Recombinant Monoclonal Wild Type Anti-Testosterone Fab Fragment
authors J.Valjakka, K.Takkinenz, T.Teerinen, H.Soderlund, J.Rouvinen
compound source
Molecule: Recombinant Monoclonal Anti-Testosterone Fab Fragment Light Chain;
Chain: L
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rv308
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkktac

Molecule: Recombinant Monoclonal Anti-Testosterone Fab Fragment Heavy Chain;
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rv308
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkktac
symmetry Space Group: P 21 21 2
R_factor 0.188 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.866 95.564 67.218 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand TES enzyme
related structures by homologous chain: 1BFO, 1DQL, 1IGC, 1RJL
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceStructural insights into steroid hormone binding: the crystal structure of a recombinant anti-testosterone Fab fragment in free and testosterone-bound forms., Valjakka J, Takkinenz K, Teerinen T, Soderlund H, Rouvinen J, J Biol Chem 2002 Feb 8;277(6):4183-90. PMID:11707437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1i9j.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 1I9J
  • CSU: Contacts of Structural Units for 1I9J
  • Likely Quarternary Molecular Structure file(s) for 1I9J
  • Structure Factors (153 Kb)
  • Retrieve 1I9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I9J from S2C, [Save to disk]
  • Re-refined 1i9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I9J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I9J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i9jh1, region H:1-118 [Jmol] [rasmolscript] [script source]
        - Domain d1i9jh2, region H:119-220 [Jmol] [rasmolscript] [script source]
        - Domain d1i9jl1, region L:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1i9jl2, region L:113-219 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i9j_H] [1i9j_L] [1i9j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1I9J: [IG_like] [IGv ] by SMART
  • Other resources with information on 1I9J
  • Community annotation for 1I9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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