1I9V CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX date
authors Mikkelsen, N.E., Johansson, K., Virtanen, A., Kirsebom, L.A.
compound source
symmetry
R_factor
R_Free 0.2750000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 5MU, MG, NMY, YG enzyme
Primary referenceAminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex., Mikkelsen NE, Johansson K, Virtanen A, Kirsebom LA, Nat Struct Biol 2001 Jun;8(6):510-4. PMID:11373618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1i9v.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1I9V
  • CSU: Contacts of Structural Units for 1I9V
  • Likely Quarternary Molecular Structure file(s) for 1I9V
  • Retrieve 1I9V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I9V from S2C, [Save to disk]
  • View 1I9V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I9V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1I9V, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i9v_A] [1i9v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1I9V
  • Community annotation for 1I9V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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