1ICH Apoptosis date Apr 01, 2001
title Solution Structure Of The Tumor Necrosis Factor Receptor-1 D Domain
authors S.F.Sukits, L.L.Lin, K.Malakian, R.Powers, G.Y.Xu
compound source
Molecule: Tumor Necrosis Factor Receptor-1
Chain: A
Fragment: Death Domain
Synonym: Tnf-1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 (De) Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset(T7)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the tumor necrosis factor receptor-1 death domain., Sukits SF, Lin LL, Hsu S, Malakian K, Powers R, Xu GY, J Mol Biol 2001 Jul 20;310(4):895-906. PMID:11453696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1ich.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1ICH
  • Original NMR restraints for 1ICH from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1ICH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ICH from S2C, [Save to disk]
    • View 1ICH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ICH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ICH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1icha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ich_A] [1ich]
  • SWISS-PROT database: [P19438]
  • Domain organization of [TNR1A_HUMAN] by SWISSPFAM
  • Domain found in 1ICH: [DEATH ] by SMART
    • Other resources with information on 1ICH
  • Community annotation for 1ICH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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