1ICY Hormone Growth Factor date Apr 02, 2001
title [Ala31,Pro32]-Pnpy Bound To Dpc Micelles
authors R.Bader, G.Rytz, M.Lerch, A.G.Beck-Sickinger, O.Zerbe
compound source
Molecule: Neuropeptide Y
Chain: A
Synonym: Npy
Engineered: Yes
Mutation: Yes
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pubk19-Apnpy-G
methodSolution NMR
ligand NH2 enzyme
related structures by homologous chain: 1QBF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKey motif to gain selectivity at the neuropeptide Y5-receptor: structure and dynamics of micelle-bound [Ala31, Pro32]-NPY., Bader R, Rytz G, Lerch M, Beck-Sickinger AG, Zerbe O, Biochemistry 2002 Jun 25;41(25):8031-42. PMID:12069594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (1icy.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1ICY
  • CSU: Contacts of Structural Units for 1ICY
  • Original NMR restraints for 1ICY from PDB
  • Retrieve 1ICY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ICY from S2C, [Save to disk]
    • View 1ICY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ICY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ICY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1icya_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1icy] [1icy_A]
  • SWISS-PROT database: [P01304]
  • Domain organization of [NPY_PIG] by SWISSPFAM
  • Domain found in 1ICY: [PAH ] by SMART
    • Other resources with information on 1ICY
  • Community annotation for 1ICY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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