1ID8 Isomerase date Apr 04, 2001
title Nmr Structure Of Glutamate Mutase (B12-Binding Subunit) Comp The Vitamin B12 Nucleotide
authors M.Tollinger, C.Eichmuller, R.Konrat, M.S.Huhta, E.N.G.Marsh, B.Kr
compound source
Molecule: Methylaspartate Mutase S Chain
Chain: A
Synonym: Glutamate Mutase
Ec: 5.4.99.1
Engineered: Yes
Organism_scientific: Clostridium Tetanomorphum
Organism_taxid: 1553
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
methodSolution NMR
ligand DBI, FOP enzyme Isomerase E.C.5.4.99.1 BRENDA
related structures by homologous chain: 1B1A, 1FMF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe B(12)-binding subunit of glutamate mutase from Clostridium tetanomorphum traps the nucleotide moiety of coenzyme B(12)., Tollinger M, Eichmuller C, Konrat R, Huhta MS, Marsh EN, Krautler B, J Mol Biol 2001 Jun 8;309(3):777-91. PMID:11397096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • Biological Unit Coordinates (1id8.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1ID8
  • CSU: Contacts of Structural Units for 1ID8
  • Retrieve 1ID8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ID8 from S2C, [Save to disk]
  • View 1ID8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ID8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ID8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1id8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1id8_A] [1id8]
  • SWISS-PROT database: [Q05488]
  • Domain organization of [MAMA_CLOTT] by SWISSPFAM
  • Other resources with information on 1ID8
  • Community annotation for 1ID8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science