1IDS Superoxide Dismutase date Sep 29, 1994
title X-Ray Structure Analysis Of The Iron-Dependent Superoxide Di From Mycobacterium Tuberculosis At 2.0 Angstroms Resolution Novel Dimer-Dimer Interactions
authors J.B.Cooper, K.Mcintyre, S.P.Wood, Y.Zhang, D.Young
compound source
Molecule: Iron Superoxide Dismutase
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.650 85.400 66.350 90.00 99.86 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1AR4, 1GN4
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...


  • Primary referenceX-ray structure analysis of the iron-dependent superoxide dismutase from Mycobacterium tuberculosis at 2.0 Angstroms resolution reveals novel dimer-dimer interactions., Cooper JB, McIntyre K, Badasso MO, Wood SP, Zhang Y, Garbe TR, Young D, J Mol Biol 1995 Mar 3;246(4):531-44. PMID:7877174
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (1ids.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 1IDS
  • CSU: Contacts of Structural Units for 1IDS
  • Likely Quarternary Molecular Structure file(s) for 1IDS
  • Structure Factors (451 Kb)
  • Retrieve 1IDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IDS from S2C, [Save to disk]
  • Re-refined 1ids structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IDS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IDS, from MSDmotif at EBI
  • Genome occurence of 1IDS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1idsa1, region A:2-85 [Jmol] [rasmolscript] [script source]
        - Domain d1idsa2, region A:86-199 [Jmol] [rasmolscript] [script source]
        - Domain d1idsb1, region B:2-85 [Jmol] [rasmolscript] [script source]
        - Domain d1idsb2, region B:86-199 [Jmol] [rasmolscript] [script source]
        - Domain d1idsc1, region C:2-85 [Jmol] [rasmolscript] [script source]
        - Domain d1idsc2, region C:86-199 [Jmol] [rasmolscript] [script source]
        - Domain d1idsd1, region D:2-85 [Jmol] [rasmolscript] [script source]
        - Domain d1idsd2, region D:86-199 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ids_C] [1ids_B] [1ids_D] [1ids_A] [1ids]
  • SWISS-PROT database: [P17670]
  • Domain organization of [SODF_MYCTU] by SWISSPFAM
  • Other resources with information on 1IDS
  • Community annotation for 1IDS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1IDS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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