1IGO Hydrolase date Apr 18, 2001
title Family 11 Xylanase
authors A.J.Oakley, C.Thomson, T.Heinrich, R.Dunlop, M.C.J.Wilce
compound source
Molecule: Family 11 Xylanase
Chain: A, B
Synonym: Endo-1,4-Beta Xylanase, Family G Xylanase
Ec: 3.2.1.8
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: B230
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.190 52.540 65.410 90.00 97.83 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1QH6
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCharacterization of a family 11 xylanase from Bacillus subtillis B230 used for paper bleaching., Oakley AJ, Heinrich T, Thompson CA, Wilce MC, Acta Crystallogr D Biol Crystallogr. 2003 Apr;59(Pt 4):627-36. Epub 2003, Mar 25. PMID:12657781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1igo.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (1igo.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1IGO
  • CSU: Contacts of Structural Units for 1IGO
  • Likely Quarternary Molecular Structure file(s) for 1IGO
  • Structure Factors (120 Kb)
  • Retrieve 1IGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IGO from S2C, [Save to disk]
  • Re-refined 1igo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IGO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IGO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1igoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1igob_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1igo_A] [1igo_B] [1igo]
  • SWISS-PROT database: [Q7SID8]
  • Domain organization of [Q7SID8_BACSU] by SWISSPFAM
  • Other resources with information on 1IGO
  • Community annotation for 1IGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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