1IIP Isomerase date Apr 24, 2001
title Bovine Cyclophilin 40, Tetragonal Form
authors P.Taylor, J.Dornan, A.Carrello, R.F.Minchin, T.Ratajczak, M.D.Wal
compound source
Molecule: Cyclophilin 40
Chain: A
Synonym: 40 Kda Peptidyl-Prolyl Cis-Trans Isomerase
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11
symmetry Space Group: P 42 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.585 94.585 118.326 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1E8K, 1QNG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo structures of cyclophilin 40: folding and fidelity in the TPR domains., Taylor P, Dornan J, Carrello A, Minchin RF, Ratajczak T, Walkinshaw MD, Structure (Camb) 2001 May 9;9(5):431-8. PMID:11377203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1iip.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1iip.pdb2.gz) 201 Kb
  • Biological Unit Coordinates (1iip.pdb3.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 1IIP
  • CSU: Contacts of Structural Units for 1IIP
  • Likely Quarternary Molecular Structure file(s) for 1IIP
  • Retrieve 1IIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IIP from S2C, [Save to disk]
  • View 1IIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IIP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IIP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iipa1, region A:197-298 [Jmol] [rasmolscript] [script source]
        - Domain d1iipa2, region A:2-196 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iip] [1iip_A]
  • SWISS-PROT database: [P26882]
  • Domain organization of [PPID_BOVIN] by SWISSPFAM
  • Domain found in 1IIP: [TPR ] by SMART
  • Other resources with information on 1IIP
  • Community annotation for 1IIP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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