1IK7	Transferase	date	May 02, 2001
title	Crystal Structure Of The Uncomplexed Pelle Death Domain
authors	T.Xiao, K.H.Gardner, S.R.Sprang
compound		source
Molecule: Probable Serinethreonine-Protein Kinase Pelle Chain: A, B Fragment: Death Domain Synonym: Pelle Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Pelle Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: I 21 21 21	R_factor 0.239 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.106 95.542 103.196 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MPD, TRS	enzyme	Transferase E.C.2.7.1.37 BRENDA
note	1IK7 is a representative structure
related structures	by homologous chain: 1D2Z
Gene Ontology	Chain Function Process Component A, B
Primary reference	Cosolvent-induced transformation of a death domain tertiary structure., Xiao T, Gardner KH, Sprang SR, Proc Natl Acad Sci U S A 2002 Aug 20;99(17):11151-6. Epub 2002 Aug 12. PMID:12177432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk] Biological Unit Coordinates (1ik7.pdb1.gz) 10 Kb Biological Unit Coordinates (1ik7.pdb2.gz) 10 Kb LPC: Ligand-Protein Contacts for 1IK7 CSU: Contacts of Structural Units for 1IK7 Likely Quarternary Molecular Structure file(s) for 1IK7 Structure Factors (148 Kb) Retrieve 1IK7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IK7 from S2C, [Save to disk] Re-refined 1ik7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1IK7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IK7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IK7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ik7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ik7b_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ik7_B] [1ik7_A] [1ik7] SWISS-PROT database: [Q05652] Domain organization of [KPEL_DROME] by SWISSPFAM Domain found in 1IK7: [DEATH ] by SMART

Other resources with information on 1IK7

Community annotation for 1IK7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---