1INN Signaling Protein date May 14, 2001
title Crystal Structure Of D. Radiodurans Luxs, P21
authors H.A.Lewis, E.B.Furlong, M.G.Bergseid, W.E.Sanderson, S.G.Buchana
compound source
Molecule: Autoinducer-2 Production Protein Luxs
Chain: A, B
Synonym: Ai-2 Synthesis Protein, Conserved Hypothetical Pro
Engineered: Yes
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.780 82.260 49.520 90.00 102.79 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MET, MSE, ZN enzyme
related structures by homologous chain: 1VGX, 1VJE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs., Lewis HA, Furlong EB, Laubert B, Eroshkina GA, Batiyenko Y, Adams JM, Bergseid MG, Marsh CD, Peat TS, Sanderson WE, Sauder JM, Buchanan SG, Structure (Camb) 2001 Jun;9(6):527-37. PMID:11435117
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1inn.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1INN
  • CSU: Contacts of Structural Units for 1INN
  • Likely Quarternary Molecular Structure file(s) for 1INN
  • Structure Factors (533 Kb)
  • Retrieve 1INN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1INN from S2C, [Save to disk]
  • Re-refined 1inn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1INN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1INN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1INN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1inna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1innb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1inn_B] [1inn] [1inn_A]
  • SWISS-PROT database: [Q9RRU8]
  • Domain organization of [LUXS_DEIRA] by SWISSPFAM
  • Other resources with information on 1INN
  • Community annotation for 1INN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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