1IRG Transcription Regulation date Nov 25, 1997
title Interferon Regulatory Factor-2 Dna Binding Domain, Nmr, 20 S
authors J.Furui, K.Uegaki, T.Yamazaki, M.Shirakawa, M.B.Swindells, H.Hara T.Taniguchi, Y.Kyogoku
compound source
Molecule: Interferon Regulatory Factor-2
Chain: A
Fragment: Residues 2 - 113
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Bl21
Cellular_location: Nucleus
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (Lambda De3)
Expression_system_plasmid: Bl21
methodSolution NMR
related structures by homologous chain: 1IRF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family., Furui J, Uegaki K, Yamazaki T, Shirakawa M, Swindells MB, Harada H, Taniguchi T, Kyogoku Y, Structure 1998 Apr 15;6(4):491-500. PMID:9562558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (633 Kb) [Save to disk]
  • Biological Unit Coordinates (1irg.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1IRG
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1IRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IRG from S2C, [Save to disk]
  • View 1IRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IRG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IRG, from MSDmotif at EBI
  • Genome occurence of 1IRG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1irg__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1irg_A] [1irg]
  • SWISS-PROT database: [P23906]
  • Domain organization of [IRF2_MOUSE] by SWISSPFAM
  • Domain found in 1IRG: [IRF ] by SMART
  • Other resources with information on 1IRG
  • Community annotation for 1IRG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1IRG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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