1IRH Protein Binding date Oct 02, 2001
title The Solution Structure Of The Third Kunitz Domain Of Tissue Pathway Inhibitor
authors S.Mine, T.Yamazaki, T.Miyata, S.Hara, H.Kato
compound source
Molecule: Tissue Factor Pathway Inhibitor
Chain: A
Fragment: The Third Kunitz Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural mechanism for heparin-binding of the third Kunitz domain of human tissue factor pathway inhibitor., Mine S, Yamazaki T, Miyata T, Hara S, Kato H, Biochemistry 2002 Jan 8;41(1):78-85. PMID:11772005
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (1irh.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1IRH
  • Original NMR restraints for 1IRH from PDB
  • Retrieve 1IRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IRH from S2C, [Save to disk]
    • View 1IRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IRH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IRH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1irha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1irh] [1irh_A]
  • SWISS-PROT database: [P10646]
  • Domain organization of [TFPI1_HUMAN] by SWISSPFAM
  • Domain found in 1IRH: [KU ] by SMART
    • Other resources with information on 1IRH
  • Community annotation for 1IRH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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