1IUZ Electron Transport date Oct 06, 1996
title Plastocyanin
authors N.Shibata
compound source
Molecule: Plastocyanin
Chain: A
 Organism_scientific: Ulva Pertusa
Organism_taxid: 3120
symmetry Space Group: P 43 3 2
R_factor 0.176 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.300 88.300 88.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CU, SO4 enzyme
related structures by homologous chain: 1PND, 7PCY
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceNovel insight into the copper-ligand geometry in the crystal structure of Ulva pertusa plastocyanin at 1.6-A resolution. Structural basis for regulation of the copper site by residue 88., Shibata N, Inoue T, Nagano C, Nishio N, Kohzuma T, Onodera K, Yoshizaki F, Sugimura Y, Kai Y, J Biol Chem 1999 Feb 12;274(7):4225-30. PMID:9933621
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1iuz.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1IUZ
  • CSU: Contacts of Structural Units for 1IUZ
  • Likely Quarternary Molecular Structure file(s) for 1IUZ
  • Structure Factors (135 Kb)
  • Retrieve 1IUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IUZ from S2C, [Save to disk]
  • Re-refined 1iuz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1IUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IUZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IUZ, from MSDmotif at EBI
  • Genome occurence of 1IUZ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iuz__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iuz] [1iuz_A]
  • SWISS-PROT database: [P56274]
  • Domain organization of [PLAS_ULVPE] by SWISSPFAM
    • Other resources with information on 1IUZ
  • Community annotation for 1IUZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1IUZ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science