1IX5 Isomerase date Jun 12, 2002
title Solution Structure Of The Methanococcus Thermolithotrophicus
authors R.Suzuki, K.Nagata, M.Kawakami, N.Nemoto, M.Furutani, K.Adachi, T. M.Tanokura
compound source
Molecule: Fkbp
Chain: A
Synonym: Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Methanothermococcus Thermolithotrophic
Organism_taxid: 2186
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11d
methodSolution NMR
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


  • Primary referenceThree-dimensional solution structure of an archaeal FKBP with a dual function of peptidyl prolyl cis-trans isomerase and chaperone-like activities., Suzuki R, Nagata K, Yumoto F, Kawakami M, Nemoto N, Furutani M, Adachi K, Maruyama T, Tanokura M, J Mol Biol 2003 May 16;328(5):1149-60. PMID:12729748
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • Biological Unit Coordinates (1ix5.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1IX5
  • Original NMR restraints for 1IX5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1IX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IX5 from S2C, [Save to disk]
  • View 1IX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IX5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IX5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ix5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ix5_A] [1ix5]
  • SWISS-PROT database: [O52980]
  • Domain organization of [FKBP_METTL] by SWISSPFAM
  • Other resources with information on 1IX5
  • Community annotation for 1IX5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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