1IY5 Hydrolase date Jul 23, 2002
title Solution Structure Of Wild Type Omsvp3
authors H.Hemmi, T.Kumazaki, T.Yamazaki, S.Kojima, T.Yoshida, Y.Kyogoku, M H.Yokosawa, K.Miura, Y.Kobayashi
compound source
Molecule: Omsvp3
Chain: A
Fragment: Third Domain
Synonym: Ovomucoid
Engineered: Yes
Organism_scientific: Lophura Nycthemera
Organism_common: Silver Pheasant
Organism_taxid: 9046
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
methodSolution NMR
related structures by homologous chain: 1IY6, 1OMT
Gene
Ontology
ChainFunctionProcessComponent
A
  • serine-type endopeptidase in...


  • Primary referenceInhibitory specificity change of the ovomucoid third domain of the silver pheasant upon introduction of an engineered Cys14-Cys39 bond., Hemmi H, Kumazaki T, Yamazaki T, Kojima S, Yoshida T, Kyogoku Y, Katsu M, Shinohara F, Yokosawa H, Miura K, Kobayashi Y, Biochemistry 2003 Mar 11;42(9):2524-34. PMID:12614146
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (1iy5.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1IY5
  • Original NMR restraints for 1IY5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1IY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IY5 from S2C, [Save to disk]
  • View 1IY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IY5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IY5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iy5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iy5_A] [1iy5]
  • SWISS-PROT database: [P67954]
  • Domain organization of [IOVO_LOPNY] by SWISSPFAM
  • Domain found in 1IY5: [KAZAL ] by SMART
  • Other resources with information on 1IY5
  • Community annotation for 1IY5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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