1IZ9 Oxidoreductase date Oct 01, 2002
title Crystal Structure Of Malate Dehydrogenase From Thermus Therm Hb8
authors R.Hirose, T.Hasegawa, A.Yamano, S.Kuramitsu, K.Hamada, Riken Stru Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Malate Dehydrogenase
Chain: A, B
Ec: 1.1.1.37
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.640 88.030 118.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.37 BRENDA
related structures by homologous chain: 1B8P, 1B8V
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1iz9.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 1IZ9
  • Likely Quarternary Molecular Structure file(s) for 1IZ9
  • Structure Factors (437 Kb)
  • Retrieve 1IZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IZ9 from S2C, [Save to disk]
  • Re-refined 1iz9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IZ9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iz9a1, region A:1-154 [Jmol] [rasmolscript] [script source]
        - Domain d1iz9a2, region A:155-327 [Jmol] [rasmolscript] [script source]
        - Domain d1iz9b1, region B:1-154 [Jmol] [rasmolscript] [script source]
        - Domain d1iz9b2, region B:155-327 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iz9] [1iz9_A] [1iz9_B]
  • SWISS-PROT database: [P10584]
  • Domain organization of [MDH_THETH] by SWISSPFAM
  • Other resources with information on 1IZ9
  • Community annotation for 1IZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science